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Perlegen Human Genome Resources
Background
This site provides access to several human genomic datasets released
by Perlegen Sciences.
The Version 2 Genome Browser
integrates data from three primary sources: Perlegen's reference genotype
data collected for the
Genetic Association Information Network (GAIN), Perlegen's
2005 survey of human genetic variation, and data from Phase II of the
International HapMap Project, a
majority of which was also generated at Perlegen. The
three sources contribute data for 600 thousand, 1.6 million, and 3.9
million SNPs, respectively, for a total of 4.3 million unique positions.
All data is in NCBI Build 36 coordinates.
A description of the GAIN partnership has been published in
Nature Genetics.
The Version 1 Genome Browser
is an archival representation of the data and analyses in our
2005 Science paper, covering 1.6 million SNPs.
It can be used to view results of the
linkage disequilibrium and haplotype block analyses reported in that
study. In addition, the raw genotype data and analysis results can be bulk
downloaded using the Data Download
section of the web site. All data is in NCBI Build 34
coordinates.
Long Range PCR Amplicons
We have released primer sequences, mapping information, and protocols
for long range PCR used for Perlegen's
genotyping in the Phase II HapMap project.
Chromosome 21 Haplotype Data
Data from our
2001 Science paper on the
haplotype structure of human chromosome 21 is also available.
Questions or comments regarding this site are welcome at browser@perlegen.com
© 2005 Perlegen Sciences Inc., All Rights Reserved
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